Index

A

A (rnets.chemistry.ChemCfg attribute) adjust_range() (in module rnets.colors.utils) anchor_node (rnets.addons.colorbar.ColorbarCfg attribute) apply_gamma() (in module rnets.colors.utils) apply_html_format() (in module rnets.plotter.utils) apply_maybe() (in module rnets.parser)

assure_compound() (in module rnets.parser) ATTR_ASSIGN (in module rnets.addons.colorbar) ATTR_SEPARATOR (in module rnets.addons.colorbar) attr_to_str() (in module rnets.addons.colorbar) Attribute (in module rnets.addons.colorbar) attributes (rnets.addons.colorbar.Item attribute)

B

BOX_TMP (in module rnets.plotter.utils) box_tmp (rnets.plotter.utils.NodeCfg attribute) build_body() (in module rnets.addons.colorbar) build_chemcfg() (in module rnets.chemistry) build_color_segment() (in module rnets.addons.colorbar) build_colorbar() (in module rnets.addons.colorbar) build_dotedge() (in module rnets.plotter.utils)

build_dotedges() (in module rnets.plotter.utils) build_dotgraph() (in module rnets.plotter.kinetic) (in module rnets.plotter.thermo) build_dotnode() (in module rnets.plotter.utils) build_glob_opt() (in module rnets.plotter.utils) build_node() (in module rnets.addons.colorbar) build_node_box() (in module rnets.plotter.utils) build_tail() (in module rnets.addons.colorbar)

C

C_BLACK (in module rnets.plotter.utils) C_WHITE (in module rnets.plotter.utils) calc_A() (in module rnets.chemistry) calc_activation_energy() (in module rnets.chemistry) calc_net_rate() (in module rnets.chemistry) calc_pseudo_k_constant() (in module rnets.chemistry) calc_reactions_k_norms() (in module rnets.chemistry) calc_relative_luminance() (in module rnets.colors.utils) cellspacing (rnets.addons.colorbar.ColorbarCfg attribute) ChemCfg (class in rnets.chemistry) CIVIDIS (in module rnets.colors.colorschemes) CIVIDIS_R (in module rnets.colors.colorschemes) CLOSE_MARK (in module rnets.addons.colorbar) Color (in module rnets.colors.utils)

color_interp() (in module rnets.plotter.utils) color_offset (rnets.plotter.utils.GraphCfg attribute) color_sel_lum() (in module rnets.colors.utils) ColorbarCfg (class in rnets.addons.colorbar) COLORSCH (in module rnets.plotter.utils) Colorscheme (in module rnets.colors.colorschemes) colorscheme (rnets.plotter.utils.GraphCfg attribute) Compound (class in rnets.struct) CompoundCol (class in rnets.parser) compounds (rnets.struct.Network attribute) (rnets.struct.Reaction attribute) conc (rnets.struct.Compound attribute) contains (rnets.addons.colorbar.Item attribute) cyclic_conditions() (in module rnets.colors.utils)

D

Direction (class in rnets.parser)

direction (rnets.dot.Edge attribute)

E

e_units (rnets.chemistry.ChemCfg attribute) EDCE_ATTR_DEF (in module rnets.plotter.utils) Edge (class in rnets.dot) edge_to_str() (in module rnets.dot) EdgeArgs (class in rnets.plotter.utils)

EdgeCfg (class in rnets.plotter.utils) edges (rnets.dot.Graph attribute) energy (rnets.struct.Compound attribute) (rnets.struct.Reaction attribute) ensure_color() (in module rnets.colors.utils)

F

FFlags (class in rnets.struct) fflags (rnets.struct.Compound attribute) fformat_to_html() (in module rnets.plotter.utils) fillcolor (rnets.addons.colorbar.ColorbarCfg attribute)

filter_unique_react() (in module rnets.plotter.kinetic) font_color (rnets.plotter.utils.NodeCfg attribute) font_color_alt (rnets.plotter.utils.NodeCfg attribute) font_lum_threshold (rnets.plotter.utils.NodeCfg attribute)

G

gen_react_arrows() (in module rnets.plotter.utils) get_colorbar() (in module rnets.plotter.kinetic) (in module rnets.plotter.thermo)

Graph (class in rnets.dot) GRAPH_ATTR_DEF (in module rnets.plotter.utils) graph_to_str() (in module rnets.dot) GraphCfg (class in rnets.plotter.utils)

H

height (rnets.addons.colorbar.ColorbarCfg attribute)

hexstr_to_rgb() (in module rnets.colors.utils) HTMLFormat (class in rnets.plotter.utils)

I

IDENT (in module rnets.dot) ident() (in module rnets.dot) ident_if() (in module rnets.dot) idx (rnets.struct.Compound attribute) (rnets.struct.Reaction attribute) INFERNO (in module rnets.colors.colorschemes) INFERNO_R (in module rnets.colors.colorschemes)

interp_c_seq() (in module rnets.colors.utils) interp_cs() (in module rnets.colors.utils) interp_fn() (in module rnets.colors.utils) interp_fn_cspace() (in module rnets.colors.utils) interp_fn_rgb_hls() (in module rnets.colors.utils) interp_fn_rgb_lab() (in module rnets.colors.utils) Item (class in rnets.addons.colorbar) item_to_str() (in module rnets.addons.colorbar)

K

kb (rnets.chemistry.ChemCfg attribute)

kind (rnets.dot.Graph attribute) (rnets.plotter.utils.GraphCfg attribute)

L

lab_to_xyz() (in module rnets.colors.utils)

LABEL_TMP (in module rnets.plotter.utils)

M

MAGMA (in module rnets.colors.colorschemes) MAGMA_R (in module rnets.colors.colorschemes) max_width (rnets.plotter.utils.EdgeCfg attribute) minmax() (in module rnets.chemistry) module rnets.addons.colorbar rnets.chemistry rnets.colors.colorschemes rnets.colors.palettes rnets.colors.utils rnets.dot rnets.parser rnets.plotter.kinetic rnets.plotter.thermo rnets.plotter.utils rnets.struct

N

n_interp (rnets.addons.colorbar.ColorbarCfg attribute) name (rnets.addons.colorbar.Item attribute) (rnets.dot.Node attribute) (rnets.struct.Compound attribute) (rnets.struct.Reaction attribute) Network (class in rnets.struct) network_conc_normalizer() (in module rnets.chemistry) network_energy_normalizer() (in module rnets.chemistry)

Node (class in rnets.dot) NODE_ATTR_DEF (in module rnets.plotter.utils) node_name (rnets.addons.colorbar.ColorbarCfg attribute) node_to_str() (in module rnets.dot) NodeCfg (class in rnets.plotter.utils) nodecolor_sel() (in module rnets.plotter.utils) nodes (rnets.dot.Graph attribute) normalizer() (in module rnets.chemistry)

O

O (in module rnets.parser) OPEN_MARK (in module rnets.addons.colorbar) opt_glob_to_str() (in module rnets.dot) options (rnets.dot.Edge attribute) (rnets.dot.Graph attribute) (rnets.dot.Node attribute) OptKind (class in rnets.dot) Opts (in module rnets.dot)

opts (rnets.plotter.utils.EdgeCfg attribute) (rnets.plotter.utils.GraphCfg attribute) (rnets.plotter.utils.NodeCfg attribute) (rnets.struct.Compound attribute) (rnets.struct.Reaction attribute) opts_glob_to_str() (in module rnets.dot) opts_to_str() (in module rnets.dot) OptsGlob (in module rnets.dot) origin (rnets.dot.Edge attribute)

P

parse_compound_line() (in module rnets.parser) parse_compounds() (in module rnets.parser) parse_compounds_from_file() (in module rnets.parser) parse_conc() (in module rnets.parser) parse_fflags() (in module rnets.parser) parse_lines() (in module rnets.parser) parse_network() (in module rnets.parser)

parse_network_from_file() (in module rnets.parser) parse_opts() (in module rnets.parser) parse_reaction_line() (in module rnets.parser) parse_reactions() (in module rnets.parser) parse_reactions_from_file() (in module rnets.parser) parse_vis() (in module rnets.parser) PLASMA (in module rnets.colors.colorschemes) PLASMA_R (in module rnets.colors.colorschemes)

R

Reaction (class in rnets.struct) ReactionCol (class in rnets.parser) reactions (rnets.struct.Network attribute) rgb_achromatize() (in module rnets.colors.utils) rgb_to_hexstr() (in module rnets.colors.utils) rgb_to_xyz() (in module rnets.colors.utils) rnets.addons.colorbar module rnets.chemistry module rnets.colors.colorschemes module rnets.colors.palettes module

rnets.colors.utils module rnets.dot module rnets.parser module rnets.plotter.kinetic module rnets.plotter.thermo module rnets.plotter.utils module rnets.struct module

S

S (in module rnets.parser) SEP_D_LV (in module rnets.dot)

SEP_S_LV (in module rnets.dot) solid_color (rnets.plotter.utils.EdgeCfg attribute)

T

T (in module rnets.parser) (rnets.chemistry.ChemCfg attribute)

target (rnets.dot.Edge attribute)

U

unapply_gamma() (in module rnets.colors.utils)

V

VIRIDIS (in module rnets.colors.colorschemes)

VIRIDIS_R (in module rnets.colors.colorschemes) Visibility (class in rnets.struct)

W

width (rnets.addons.colorbar.ColorbarCfg attribute) (rnets.plotter.utils.EdgeCfg attribute)

X

xyz_to_lab() (in module rnets.colors.utils)

xyz_to_rgb() (in module rnets.colors.utils)